This paper was cited by:
Major disruption of gene expression in hybrids between young sympatric anadromous and resident populations of brook charr (
Salvelinus fontinalis
Mitchill)
JESUS MAVAREZ, CELINE AUDET, LOUIS BERNATCHEZ
Journal of Evolutionary Biology. Jul 2009
CrossRef Generalized Augmentation to Control the False Discovery Exceedance in Multiple Testing
ALESSIO FARCOMENI
Scandinavian Journal of Statistics. Apr 2009
CrossRef Microarray image enhancement by denoising using decimated and undecimated multiwavelet transforms
Ali Zifan, Mohammad Hassan Moradi, Shahriar Gharibzadeh
Signal, Image and Video Processing. Mar 2009
CrossRef Distinct Expression Patterns of Genes Associated with Muscle Growth and Adipose Deposition in Tibetan Pigs: A Possible Adaptive Mechanism for High Altitude Conditions
Li Zhu, Mingzhou Li, Xuewei Li, Surong Shuai, Haifeng Liu, Jinyong Wang, Anan Jiang, Yiren Gu, Kai Zhang, Xiaokun Teng, Zhongrong Jiang
High Altitude Medicine & Biology. Mar 2009, Vol. 10, No. 1: 45-55
Abstract |
Full Text PDF |
Reprints & PermissionsIdentifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel
Jian Yang, Yangyun Zou, Jun Zhu
Functional & Integrative Genomics. Mar 2009, Vol. 9, No. 1: 59-66
CrossRef PPARγ2 nuclear receptor controls multiple regulatory pathways of osteoblast differentiation from marrow mesenchymal stem cells
Keith R. Shockley, Oxana P. Lazarenko, Piotr J. Czernik, Clifford J. Rosen, Gary A. Churchill, Beata Lecka-Czernik
Journal of Cellular Biochemistry. Mar 2009, Vol. 106, No. 2: 232-246
CrossRef Gene Expression Divergence and Hybrid Misexpression between Lake Whitefish Species Pairs (Coregonus spp. Salmonidae)
S. Renaut, A.W. Nolte, L. Bernatchez
Molecular Biology and Evolution. Feb 2009, Vol. 26, No. 4: 925-936
CrossRef Improved Detection of Differentially Expressed Genes Through Incorporation of Gene Locations
Guanghua Xiao, Cavan Reilly, Arkady B. Khodursky
Biometrics. Feb 2009
CrossRef Macrophage Responses to Silica Nanoparticles are Highly Conserved Across Particle Sizes
K. M. Waters, L. M. Masiello, R. C. Zangar, B. J. Tarasevich, N. J. Karin, R. D. Quesenberry, S. Bandyopadhyay, J. G. Teeguarden, J. G. Pounds, B. D. Thrall
Toxicological Sciences. Jan 2009, Vol. 107, No. 2: 553-569
CrossRef Towards functional phosphoproteomics by mapping differential phosphorylation events in signaling networks
Sergio de la Fuente van Bentem, Wieslawa I. Mentzen, Alberto de la Fuente, Heribert Hirt
PROTEOMICS. Dec 2008, Vol. 8, No. 21: 4453-4465
CrossRef Factorial microarray analysis of zebrafish retinal development
Y. F. Leung, P. Ma, B. A. Link, J. E. Dowling
Proceedings of the National Academy of Sciences. Oct 2008, Vol. 105, No. 35: 12909-12914
CrossRef The “Window t test”: a simple and powerful approach to detect differentially expressed genes in microarray datasets
Fabrice Berger, Benoît Hertogh, Michaël Pierre, Anthoula Gaigneaux, Eric Depiereux
Central European Journal of Biology. Oct 2008, Vol. 3, No. 3: 327-344
CrossRef Developmental Stage and Level of Codon Usage Bias in Drosophila
S. Vicario, C. E. Mason, K. P. White, J. R. Powell
Molecular Biology and Evolution. Sep 2008, Vol. 25, No. 11: 2269-2277
CrossRef Induction of Stress Genes in
Saccharomyces cerevisiae
during Starvation
C. Klockow, F. Stahl, T. Scheper, B. Hitzmann
Engineering in Life Sciences. Sep 2008, Vol. 8, No. 4: 431-437
CrossRef Expression profiling analysis for genes related to meat quality and carcass traits during postnatal development of backfat in two pig breeds
MingZhou Li, Li Zhu, XueWei Li, SuRong Shuai, XiaoKun Teng, HuaSheng Xiao, Qiang Li, Lei Chen, YuJiao Guo, JinYong Wang
Science in China Series C: Life Sciences. Sep 2008, Vol. 51, No. 8: 718-733
CrossRef Effects of Prenatal Tobacco Exposure on Gene Expression Profiling in Umbilical Cord Tissue
NAVEED HUSSAIN, WINFRIED KRUEGER, JONATHAN COVAULT, STEPHEN WALSH, HENRY R. KRANZLER, CHERYL ONCKEN
Pediatric Research. Sep 2008, Vol. 64, No. 2: 147-153
CrossRef Transcriptome Analysis of Organisms with Food Safety Relevance
Supraja Puttamreddy, Michael D. Carruthers, Melissa L. Madsen, F. Chris Minion
Foodborne Pathogens and Disease. Aug 2008, Vol. 5, No. 4: 517-529
Abstract |
Full Text PDF |
Reprints & PermissionsPopulation transcriptomics of life-history variation in the genus
Salmo
THOMAS GIGER, LAURENT EXCOFFIER, URSULA AMSTUTZ, PHILIP J. R. DAY, ALEXIS CHAMPIGNEULLE, MICHAEL M. HANSEN, JANET KELSO, CARLO R. LARGIADÈR
Molecular Ecology. Aug 2008, Vol. 17, No. 13: 3095-3108
CrossRef Effect of Veillonella parvula on the antimicrobial resistance and gene expression of Streptococcus mutans grown in a dual-species biofilm
S. B. I. Luppens, D. Kara, L. Bandounas, M. J. Jonker, F. R. A. Wittink, O. Bruning, T. M. Breit, J. M. ten Cate, W. Crielaard
Oral Microbiology and Immunology. Jul 2008, Vol. 23, No. 3: 183-189
CrossRef Prediction of wood density breeding values of Pinus taeda elite parents from unbalanced data: A method for adjustment of site and age effects using common checklots
Fikret Isik, Bailian Li, Barry Goldfarb, Steve McKeand
Annals of Forest Science. Jul 2008, Vol. 65, No. 4: 1
CrossRef A Comprehensive Analysis of the Combined Effects of High Light and High Temperature Stresses on Gene Expression in Sunflower
T. Hewezi, M. Leger, L. Gentzbittel
Annals of Botany. May 2008, Vol. 102, No. 1: 127-140
CrossRef Global monitoring of autumn gene expression within and among phenotypically divergent populations of Sitka spruce (Picea sitchensis)
Jason A. Holliday, Steven G. Ralph, Richard White, Jörg Bohlmann, Sally N. Aitken
New Phytologist. May 2008, Vol. 178, No. 1: 103-122
CrossRef The transcriptomics of life-history trade-offs in whitefish species pairs (
Coregonus
sp.)
J. ST-CYR, N. DEROME, L. BERNATCHEZ
Molecular Ecology. May 2008, Vol. 17, No. 7: 1850-1870
CrossRef Gene expression profiling to identify markers associated with deregulated hTERT in HPV-transformed keratinocytes and cervical cancer
Jillian de Wilde, Saskia M. Wilting, Chris J.L.M. Meijer, Mark A. van de Wiel, Bauke Ylstra, Peter J.F. Snijders, Renske D.M. Steenbergen
International Journal of Cancer. Mar 2008, Vol. 122, No. 4: 877-888
CrossRef Differential response of the plant Medicago truncatula to its symbiont Sinorhizobium meliloti or an exopolysaccharide-deficient mutant
K. M. Jones, N. Sharopova, D. P. Lohar, J. Q. Zhang, K. A. VandenBosch, G. C. Walker
Proceedings of the National Academy of Sciences. Feb 2008, Vol. 105, No. 2: 704-709
CrossRef Lifelong α-Tocopherol Supplementation Increases the Median Life Span of C57BL/6 Mice in the Cold but Has Only Minor Effects on Oxidative Damage
Colin Selman, Jane S. McLaren, Claus Mayer, Jackie S. Duncan, Andrew R. Collins, Garry G. Duthie, Paula Redman, John R. Speakman
Rejuvenation Research. Feb 2008, Vol. 11, No. 1: 83-96
Abstract |
Full Text PDF |
Reprints & PermissionsCorrelation network analysis for data integration and biomarker selection
Aram Adourian, Ezra Jennings, Raji Balasubramanian, Wade M. Hines, Doris Damian, Thomas N. Plasterer, Clary B. Clish, Paul Stroobant, Robert McBurney, Elwin R. Verheij, Ivana Bobeldijk, Jan van der Greef, Johan Lindberg, Kerstin Kenne, Ulf Andersson, Heike Hellmold, Kerstin Nilsson, Hugh Salter, Ina Schuppe-Koistinen
Molecular BioSystems. Feb 2008, Vol. 4, No. 3: 249
CrossRef Genetic consequences of interbreeding between farmed and wild Atlantic salmon: insights from the transcriptome
CHRISTIAN ROBERGE, ÉRIC NORMANDEAU, SIGURD EINUM, HELGA GUDERLEY, LOUIS BERNATCHEZ
Molecular Ecology. Feb 2008, Vol. 17, No. 1: 314-324
CrossRef Biotechnology. Gene expression and microchips: Problems of the quantitative analysis
A. N. Sveshnikova, P. S. Ivanov
Russian Journal of General Chemistry. Dec 2007, Vol. 77, No. 11: 2071-2081
CrossRef Regulation of Gene Expression in Rats With Heart Failure Treated With the Thyroid Hormone Analog 3,5-Diiodothyropropionic Acid (DITPA) and the Combination of DITPA and Captopril
Niranjan Maitra, Cynthia Adamson, Kevin Greer, Scott Klewer, James Hoying, Joseph J Bahl, Steven Goldman, Eugene Morkin
Journal of Cardiovascular Pharmacology. Dec 2007, Vol. 50, No. 5: 526-534
CrossRef An investigation of two multivariate permutation methods for controlling the false discovery proportion
Edward L. Korn, Ming-Chung Li, Lisa M. McShane, Richard Simon
Statistics in Medicine. Nov 2007, Vol. 26, No. 24: 4428-4440
CrossRef An Oligonucleotide Microarray Resource for Transcriptional Profiling of
Bradyrhizobium japonicum
Woo-Suk Chang, William L. Franck, Eddie Cytryn, Sooyoung Jeong, Trupti Joshi, David W. Emerich, Michael J. Sadowsky, Dong Xu, Gary Stacey
Molecular Plant-Microbe Interactions. Nov 2007, Vol. 20, No. 10: 1298-1307
CrossRef Sharp Simultaneous Confidence Intervals for the Means of Selected Populations with Application to Microarray Data Analysis
Jing Qiu, J. T. Gene Hwang
Biometrics. Oct 2007, Vol. 63, No. 3: 767-776
CrossRef Estimating the False Discovery Rate Using Nonparametric Deconvolution
Mark A. van de Wiel, Kyung In Kim
Biometrics. Oct 2007, Vol. 63, No. 3: 806-815
CrossRef Transcript abundance profiles reveal larger and more complex responses of grapevine to chilling compared to osmotic and salinity stress
Elizabeth A. R. Tattersall, Jérôme Grimplet, Laurent DeLuc, Matthew D. Wheatley, Delphine Vincent, Craig Osborne, Ali Ergül, Evan Lomen, Robert R. Blank, Karen A. Schlauch, John C. Cushman, Grant R. Cramer
Functional & Integrative Genomics. Sep 2007, Vol. 7, No. 4: 317-333
CrossRef Designs for two-colour microarray experiments
R. A. Bailey
Journal of the Royal Statistical Society: Series C (Applied Statistics). Sep 2007, Vol. 56, No. 4: 365-394
CrossRef Systems level analysis of osteoclastogenesis reveals intrinsic and extrinsic regulatory interactions
Jennifer Kiesel, Cheryl Miller, Yousef Abu-Amer, Rajeev Aurora
Developmental Dynamics. Sep 2007, Vol. 236, No. 8: 2181-2197
CrossRef Transcriptional profiles of primary metabolism and signal transduction-related genes in response to water stress in field-grown sunflower genotypes using a thematic cDNA microarray
Jane Roche, Tarek Hewezi, Andrée Bouniols, Laurent Gentzbittel
Planta. Aug 2007, Vol. 226, No. 3: 601-617
CrossRef Molecular portrait of high productivity in recombinant NS0 cells
Gargi Seth, Robin J. Philp, Ally Lau, Kok Yee Jiun, Miranda Yap, Wei-Shou Hu
Biotechnology and Bioengineering. Aug 2007, Vol. 97, No. 4: 933-951
CrossRef Wnt Pathway Anomalies in Developing Amygdalae of Turner Syndrome-like Mice
Adam S. Raefski, Benjamin R. Carone, Anupinder Kaur, Winfried Krueger, Michael J. O’Neill
Journal of Molecular Neuroscience. Jul 2007, Vol. 32, No. 2: 111-119
CrossRef Methods for Estimating and Mitigating Errors in Spotted, Dual-color DNA Microarrays
Tobias K. Karakach, Peter D. Wentzell
OMICS: A Journal of Integrative Biology. Jun 2007, Vol. 11, No. 2: 186-199
Abstract |
Full Text PDF |
Reprints & PermissionsA Network of Genes Regulated by Light in Cyanobacteria
Rajeev Aurora, Yukako Hihara, Abhay K. Singh, Himadri B. Pakrasi
OMICS: A Journal of Integrative Biology. Jun 2007, Vol. 11, No. 2: 166-185
Abstract |
Full Text PDF |
Reprints & PermissionsA CENTENNIAL CELEBRATION FOR QUANTITATIVE GENETICS
Derek A. Roff
Evolution. Jun 2007, Vol. 61, No. 5: 1017-1032
CrossRef Genome-Wide Reprogramming in Hybrids of Somatic Cells and Embryonic Stem Cells
Dominic J. Ambrosi, Borko Tanasijevic, Anupinder Kaur, Craig Obergfell, Rachel J. O'Neill, Winfried Krueger, Theodore P. Rasmussen
Stem Cells. Jun 2007, Vol. 25, No. 5: 1104-1113
CrossRef Key aspects of analyzing microarray gene-expression data
James J Chen
Pharmacogenomics. Jun 2007, Vol. 8, No. 5: 473-482
CrossRef An adaptive empirical Bayesian thresholding procedure for analysing microarray experiments with replication
Rebecca E. Walls, Stuart Barber, John T. Kent, Mark S. Gilthorpe
Journal of the Royal Statistical Society: Series C (Applied Statistics). Jun 2007, Vol. 56, No. 3: 271-291
CrossRef Identification of differentially expressed genes and false discovery rate in microarray studies
Arief Gusnanto, Stefano Calza, Yudi Pawitan
Current Opinion in Lipidology. May 2007, Vol. 18, No. 2: 187???193
CrossRef Transcriptional profiling of wheat caryopsis development using cDNA microarrays
Debbie L. Laudencia-Chingcuanco, Boryana S. Stamova, Frank M. You, Gerard R. Lazo, Diane M. Beckles, Olin D. Anderson
Plant Molecular Biology. Mar 2007, Vol. 63, No. 5: 651-668
CrossRef Gene expression associated with compatible viral diseases in grapevine cultivars
C. Espinoza, A. Vega, C. Medina, K. Schlauch, G. Cramer, P. Arce-Johnson
Functional & Integrative Genomics. Mar 2007, Vol. 7, No. 2: 95-110
CrossRef Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles
Grant R. Cramer, Ali Ergül, Jerome Grimplet, Richard L. Tillett, Elizabeth A. R. Tattersall, Marlene C. Bohlman, Delphine Vincent, Justin Sonderegger, Jason Evans, Craig Osborne, David Quilici, Karen A. Schlauch, David A. Schooley, John C. Cushman
Functional & Integrative Genomics. Mar 2007, Vol. 7, No. 2: 111-134
CrossRef Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern
Stephanie Meyer, Heike Pospisil, Stefan Scholten
Plant Molecular Biology. Mar 2007, Vol. 63, No. 3: 381-391
CrossRef Qualification of Embryonal Carcinoma 2102Ep As a Reference for Human Embryonic Stem Cell Research
Richard Josephson, Carol J. Ording, Ying Liu, Soojung Shin, Uma Lakshmipathy, Araz Toumadje, Bradley Love, Jonathan D. Chesnut, Peter W. Andrews, Mahendra S. Rao, Jonathan M. Auerbach
Stem Cells. Mar 2007, Vol. 25, No. 2: 437-446
CrossRef A conditionally immortalized cell line model for the study of human prostatic epithelial cell differentiation
Bernadette Daly-Burns, Tahirah N. Alam, Alan Mackay, Jeremy Clark, Christopher J. Shepherd, Siân Rizzo, Roger Tatoud, Michael J. O'Hare, John R. Masters, David L. Hudson
Differentiation. Feb 2007, Vol. 75, No. 1: 35-48
CrossRef Normalisation of Multicondition cDNA Macroarray Data
Nicola L. Dawes, Jarka Glassey
Comparative and Functional Genomics. Feb 2007, Vol. 2007: 1-13
CrossRef Comparison between SAGE and cDNA microarray for quantitative accuracy in transcript profiling analyses
Eun Mi Eom, Ji Yeors Lee, Hye Sang Park, Youn Jung Byun, Young Mie Ha-Lee, Dong Hee Lee
Journal of Plant Biology. Jan 2007, Vol. 49, No. 6: 498-506
CrossRef Reproducibility Probability Score—incorporating measurement variability across laboratories for gene selection
Guixian Lin, Xuming He, Hanlee Ji, Leming Shi, Ronald W Davis, Sheng Zhong
Nature Biotechnology. Jan 2007, Vol. 24, No. 12: 1476-1477
CrossRef UPSC-BASE -
Populus
transcriptomics online
Andreas Sjödin, Max Bylesjö, Oskar Skogström, Daniel Eriksson, Peter Nilsson, Patrik Rydén, Stefan Jansson, Jan Karlsson
The Plant Journal. Jan 2007, Vol. 48, No. 5: 806-817
CrossRef Human laminin-5 and laminin-10 mediated gene expression of prostate carcinoma cells
Robert Calaluce, Shaleen K. Beck, Elisabeth L. Bair, Ritu Pandey, Kevin A. Greer, Adam M. Hoying, James B. Hoying, David W. Mount, Raymond B. Nagle
The Prostate. Oct 2006, Vol. 66, No. 13: 1381-1390
CrossRef A robust statistical procedure to discover expression biomarkers using microarray genomic expression data
Yang-yun Zou, Jian Yang, Jun Zhu
Journal of Zhejiang University SCIENCE B. Sep 2006, Vol. 7, No. 8: 603-607
CrossRef Differential gene expression of wheat progeny with contrasting levels of transpiration efficiency
Gang-Ping Xue, C. Lynne McIntyre, Scott Chapman, Neil I. Bower, Heather Way, Antonio Reverter, Bryan Clarke, Ray Shorter
Plant Molecular Biology. Sep 2006, Vol. 61, No. 6: 863-881
CrossRef Gene expression analysis of mouse chromosome substitution strains
Keith R. Shockley, Gary A. Churchill
Mammalian Genome. Jul 2006, Vol. 17, No. 6: 598-614
CrossRef From genetical genomics to systems genetics: potential applications in quantitative genomics and animal breeding
Haja N. Kadarmideen, Peter Rohr, Luc L.G. Janss
Mammalian Genome. Jul 2006, Vol. 17, No. 6: 548-564
CrossRef A cDNA microarray approach to decipher sunflower (Helianthus annuus) responses to the necrotrophic fungus Phoma macdonaldii
Marion Alignan, Tarek Hewezi, Michel Petitprez, Gregory Dechamp-Guillaume, Laurent Gentzbittel
New Phytologist. Jun 2006, Vol. 170, No. 3: 523-536
CrossRef Improving reliability and performance of DNA microarrays
Maria Sievertzon, Peter Nilsson, Joakim Lundeberg
Expert Review of Molecular Diagnostics. Jun 2006, Vol. 6, No. 3: 481-492
CrossRef Primary metabolic pathways and signal transduction in sunflower (Helianthus annuus L.): comparison of transcriptional profiling in leaves and immature embryos using cDNA microarrays
Tarek Hewezi, Michel Petitprez, Laurent Gentzbittel
Planta. May 2006, Vol. 223, No. 5: 948-964
CrossRef Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression
THOMAS E. JUENGER, TIERNEY WAYNE, SANDRA BOLES, V. VAUGHAN SYMONDS, JOHN MCKAY, SEAN J. COUGHLAN
Molecular Ecology. May 2006, Vol. 15, No. 5: 1351-1365
CrossRef Parallelism in gene transcription among sympatric lake whitefish (Coregonus clupeaformis Mitchill) ecotypes
N. DEROME, P. DUCHESNE, L. BERNATCHEZ
Molecular Ecology. May 2006, Vol. 15, No. 5: 1239-1249
CrossRef Application of reliability coefficients in cDNA microarray data analysis
Wenqing He, Shelley B. Bull, Nalan Gokgoz, Irene Andrulis, Jay Wunder
Statistics in Medicine. Apr 2006, Vol. 25, No. 6: 1051-1066
CrossRef Bayesian Modeling of Differential Gene Expression
Alex Lewin, Sylvia Richardson, Clare Marshall, Anne Glazier, Tim Aitman
Biometrics. Apr 2006, Vol. 62, No. 1: 10-18
CrossRef Array-based methods for diagnosis and prevention of transplant rejection
Qiuheng Zhang, Elaine F Reed
Expert Review of Molecular Diagnostics. Apr 2006, Vol. 6, No. 2: 165-178
CrossRef Ecological and evolutionary genomics of
Saccharomyces cerevisiae
CHRISTIAN R. LANDRY, JEFFREY P. TOWNSEND, DANIEL L. HARTL, DUCCIO CAVALIERI
Molecular Ecology. Apr 2006, Vol. 15, No. 3: 575-591
CrossRef Using endophenotypes for pathway clusters to map complex disease genes
Wen-Harn Pan, Ke-Shiuan Lynn, Chun-Houh Chen, Yi-Lin Wu, Chung-Yen Lin, Hsing-Yi Chang
Genetic Epidemiology. Mar 2006, Vol. 30, No. 2: 143-154
CrossRef Applications of genomic technologies to the study of organochlorine pesticide-induced reproductive toxicity in fish
Natàlia Garcia-Reyero, Nancy D. Denslow
Journal of Pesticide Science. Feb 2006, Vol. 31, No. 3: 252-262
CrossRef Rapid parallel evolutionary changes of gene transcription profiles in farmed Atlantic salmon
CHRISTIAN ROBERGE, SIGURD EINUM, HELGA GUDERLEY, LOUIS BERNATCHEZ
Molecular Ecology. Feb 2006, Vol. 15, No. 1: 9-20
CrossRef Some Statistical Issues in Microarray Gene Expression Data
Matthew S. Mayo, Byron J. Gajewski, Jeffrey S. Morris
Radiation Research. Feb 2006, Vol. 165, No. 6: 745
CrossRef A Nonparametric Likelihood Ratio Test to Identify Differentially Expressed Genes from Microarray Data
Sankar Bokka, Sunil K Mathur
Applied Bioinformatics. Feb 2006, Vol. 5, No. 4: 267-276
CrossRef The Use of Background Signal in the Transformation of cDNA-Microarray Measurements
Suzy Van Sanden, Tomasz Burzykowski
Applied Bioinformatics. Feb 2006, Vol. 5, No. 3: 161-172
CrossRef Associating phenotypes with molecular events: recent statistical advances and challenges underpinning microarray experiments
Yulan Liang, Arpad Kelemen
Functional & Integrative Genomics. Feb 2006, Vol. 6, No. 1: 1-13
CrossRef Microarray technology in the study of obesity and non-alcoholic fatty liver disease
Ancha Baranova, Karen Schlauch, Shobha Gowder, Rochelle Collantes, Vikas Chandhoke, Zobair M. Younossi
Liver International. Jan 2006, Vol. 25, No. 6: 1091-1096
CrossRef Expression Profiling Soybean Response to
Pseudomonas syringae
Reveals New Defense-Related Genes and Rapid HR-Specific Downregulation of Photosynthesis
Jijun Zou, Sandra Rodriguez-Zas, Mihai Aldea, Min Li, Jin Zhu, Delkin O. Gonzalez, Lila O. Vodkin, Evan DeLucia, Steven J. Clough
Molecular Plant-Microbe Interactions. Dec 2005, Vol. 18, No. 11: 1161-1174
CrossRef The antiangiogenic tissue kallikrein pattern of endothelial cells in systemic sclerosis
Betti Giusti, Simona Serratì, Francesca Margheri, Laura Papucci, Luciana Rossi, Filippo Poggi, Alberto Magi, Angela Del Rosso, Marina Cinelli, Serena Guiducci, Bashar Kahaleh, Marco Matucci-Cerinic, Rosanna Abbate, Gabriella Fibbi, Mario Del Rosso
Arthritis & Rheumatism. Dec 2005, Vol. 52, No. 11: 3618-3628
CrossRef Impact of microarray technology in nutrition and food research
Bettina Spielbauer, Frank Stahl
Molecular Nutrition & Food Research. Nov 2005, Vol. 49, No. 10: 908-917
CrossRef Unravelling the functional interaction structure of a cellular network from temporal slope information of experimental data
Kwang-Hyun Cho, Sung-Young Shin, Sang-Mok Choo
FEBS Journal. Sep 2005, Vol. 272, No. 15: 3950-3959
CrossRef Evaluation of an Affymetrix High-density Oligonucleotide Microarray Platform as a Measurement System
Edwin R. van den Heuvel, Geert Geeven, Susanne Bauerschmidt, Jan E. M. Polman
Quality and Reliability Engineering International. Sep 2005, Vol. 21, No. 5: 491-508
CrossRef APPLICATIONS OF DNA MICROARRAYS IN BIOLOGY
Roland B. Stoughton
Annual Review of Biochemistry. Aug 2005, Vol. 74, No. 1: 53-82
CrossRef Stochastic Models Inspired by Hybridization Theory for Short Oligonucleotide Arrays
Zhijin Wu, Rafael A. Irizarry
Journal of Computational Biology. Jul 2005, Vol. 12, No. 6: 882-893
Abstract |
Full Text PDF |
Reprints & PermissionsImmune response in silico (IRIS): immune-specific genes identified from a compendium of microarray expression data
A R Abbas, D Baldwin, Y Ma, W Ouyang, A Gurney, F Martin, S Fong, M van Lookeren Campagne, P Godowski, P M Williams, A C Chan, H F Clark
Genes and Immunity. Jul 2005, Vol. 6, No. 4: 319-331
CrossRef Bayesian Normalization and Identification for Differential Gene Expression Data
Dabao Zhang, Martin T. Wells, Christine D. Smart, William E. Fry
Journal of Computational Biology. May 2005, Vol. 12, No. 4: 391-406
Abstract |
Full Text PDF |
Reprints & PermissionsReassessing design and analysis of two-colour microarray experiments using mixed effects models
Guilherme J. M. Rosa, Juan P. Steibel, Robert J. Tempelman
Comparative and Functional Genomics. May 2005, Vol. 6, No. 3: 123-131
CrossRef Gene expression in tissue associated with extracellular matrix modified ePTFE
Mark A. Schwartz, Alice L. Stone, Kevin A. Greer, James B. Hoying, Stuart K. Williams
Journal of Biomedical Materials Research Part A. May 2005, Vol. 73A, No. 1: 30-38
CrossRef Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System
Lang Li, Huidong Shi, Constantin Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew
Journal of Computational Biology. Apr 2005, Vol. 12, No. 3: 370-390
Abstract |
Full Text PDF |
Reprints & PermissionsSystemic response to aphid infestation by Myzus persicae in the phloem of Apium graveolens
Fanchon Divol, Fran
oise Vilaine, Sandra Thibivilliers, Jo
lle Amselem, Jean-Christophe Palauqui, Chantal Kusiak, Sylvie Dinant
Plant Molecular Biology. Apr 2005, Vol. 57, No. 4: 517-540
CrossRef Discriminate gene lists derived from cDNA microarray profiles of limited samples permit distinguishing mesenchymal neoplasia ex vivo
David E. Joyner, Mark L.Wade, Aniko Szabo, Jeffrey Bastar, Cheryl M. Coffin, Karen H. Albritton, Philip S. Bernard, R. Lor Randall
Journal of Cancer Research and Clinical Oncology. Apr 2005, Vol. 131, No. 3: 137-146
CrossRef A two-step strategy for detecting differential gene expression in cDNA microarray data
Yan Lu, Jun Zhu, Pengyuan Liu
Current Genetics. Mar 2005, Vol. 47, No. 2: 121-131
CrossRef Gene expression profiling of ovine skin and wool follicle development using a combined ovine–bovine skin cDNA microarray
B. J. Norris, N. I. Bower, W. J. M. Smith, G. R. Cam, A. Reverter
Australian Journal of Experimental Agriculture. Feb 2005, Vol. 45, No. 8: 867
CrossRef Laboratory variability does not preclude identification of biological functions impacted by hydroxyurea
Arne Müller, Eric Boitier, Ting Hu, Gregory J. Carr, Anne-Céline Le Fèvre, Jean-Pierre Marchandeau, Manoli Flor, Felicia Jefferson, Marilyn J. Aardema, Véronique Thybaud
Environmental and Molecular Mutagenesis. Feb 2005, Vol. 46, No. 4: 221-235
CrossRef DNA microarrays — techniques and applications in microbial systems
T. Majtán, G. Bukovská, J. Timko
Folia Microbiologica. Dec 2004, Vol. 49, No. 6: 635-664
CrossRef Median-of-Subsets Normalization of Intensities for cDNA Array Data
Robert R. Delongchamp, Cruz Velasco, Mehdi Razzaghi, Angela Harris, Dan Casciano
DNA and Cell Biology. Oct 2004, Vol. 23, No. 10: 653-659
Abstract |
Full Text PDF |
Reprints & PermissionsBalancing false positives and false negatives for the detection of differential expression in malignancies
F De Smet, Y Moreau, K Engelen, D Timmerman, I Vergote, B De Moor
British Journal of Cancer. Oct 2004
CrossRef ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development
Rob Alba, Zhangjun Fei, Paxton Payton, Yang Liu, Shanna L. Moore, Paul Debbie, Jonathan Cohn, Mark D'Ascenzo, Jeffrey S. Gordon, Jocelyn K. C. Rose, Gregory Martin, Steven D. Tanksley, Mondher Bouzayen, Molly M. Jahn, Jim Giovannoni
The Plant Journal. Oct 2004, Vol. 39, No. 5: 697-714
CrossRef A Genomic Predictor of Oral Squamous Cell Carcinoma
Mark E. Whipple, Eduardo Mendez, D Gregory Farwell, S Nicholas Agoff, Chu Chen
The Laryngoscope. Sep 2004, Vol. 114, No. 8: 1346-1354
CrossRef Sample Size for Identifying Differentially Expressed Genes in Microarray Experiments
Sue-Jane Wang, James J. Chen
Journal of Computational Biology. Aug 2004, Vol. 11, No. 4: 714-726
Abstract |
Full Text PDF |
Reprints & PermissionsStudy of Arabidopsis thalianaresistome in response to cucumber mosaic virus infection using whole genome microarray
Rajendra Marathe, Zhong Guan, Radhamani Anandalakshmi, Hongyu Zhao, S. Dinesh-Kumar
Plant Molecular Biology. Aug 2004, Vol. 55, No. 4: 501-520
CrossRef Characterization of heterogeneity in the molecular pathogenesis of lupus nephritis from transcriptional profiles of laser-captured glomeruli
Karin S. Peterson, Jing-Feng Huang, Jessica Zhu, Vivette D’Agati, Xuejun Liu, Nancy Miller, Mark G. Erlander, Michael R. Jackson, Robert J. Winchester
Journal of Clinical Investigation. Jul 2004, Vol. 113, No. 12: 1722-1733
CrossRef Modeling Microarray Data Using a Threshold Mixture Model
Goran Kauermann, Paul Eilers
Biometrics. Jul 2004, Vol. 60, No. 2: 376-387
CrossRef Novel tumor necrosis factor ?-regulated genes in rheumatoid arthritis
Huang-Ge Zhang, Karren Hyde, Grier P. Page, Jacob P. L. Brand, Juling Zhou, Shaohua Yu, David B. Allison, Hui-Chen Hsu, John D. Mountz
Arthritis & Rheumatism. Mar 2004, Vol. 50, No. 2: 420-431
CrossRef Regulatory gene expression in skeletal muscle of highly endurance-trained humans
M. Wittwer, R. Billeter, H. Hoppeler, M. Fluck
Acta Physiologica Scandinavica. Mar 2004, Vol. 180, No. 2: 217-227
CrossRef Which to use? - microarray data analysis in input and output data processing
Qingwei Zhang, Rie Ushijima, Takatoshi Kawai, Hiroshi Tanaka
Chem-Bio Informatics Journal. Feb 2004, Vol. 4, No. 2: 56-72
CrossRef Phenotype Characterisation Using Integrated Gene Transcript, Protein and Metabolite Profiling
Matej Ore??i??, Clary B Clish, Eugene J Davidov, Elwin Verheij, Jack Vogels, Louis M Havekes, Eric Neumann, Aram Adourian, Stephen Naylor, Jan van der Greef, Thomas Plasterer
Applied Bioinformatics. Feb 2004, Vol. 3, No. 4: 205-217
CrossRef Microarrays in biology and medicine
Supratim Choudhuri
Journal of Biochemical and Molecular Toxicology. Feb 2004, Vol. 18, No. 4: 171-179
CrossRef Allelic variations in gene expression
Hai Yan, Wei Zhou
Current Opinion in Oncology. Feb 2004, Vol. 16, No. 1: 39-43
CrossRef On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
C. M. Kendziorski, M. A. Newton, H. Lan, M. N. Gould
Statistics in Medicine. Jan 2004, Vol. 22, No. 24: 3899-3914
CrossRef A novel approach for high-quality microarray processing using third-dye array visualization technology
Xujing Wang, Nan Jiang, Xin Feng, Yizhou Xie, P.J. Tonellato, S. Ghosh, M.J. Hessner
IEEE Transactions on Nanobioscience. Jan 2004, Vol. 2, No. 4: 193-201
CrossRef Microarray image enhancement by denoising using stationary wavelet transform
X.H. Wang, R.S.H. Istepanian, Yong Hua Song
IEEE Transactions on Nanobioscience. Jan 2004, Vol. 2, No. 4: 184-189
CrossRef Linear Models for Microarray Data Analysis: Hidden Similarities and Differences
M. Kathleen Kerr
Journal of Computational Biology. Dec 2003, Vol. 10, No. 6: 891-901
Abstract |
Full Text PDF |
Reprints & PermissionsApplication of functional genomics in allergy and clinical immunology
R. Pawliczak, J. H. Shelhamer
Allergy. Nov 2003, Vol. 58, No. 10: 973-980
CrossRef Towards deciphering phloem: a transcriptome analysis of the phloem of
Apium graveolens
F. Vilaine, J.-C. Palauqui, J. Amselem, C. Kusiak, R. Lemoine, S. Dinant
The Plant Journal. Nov 2003, Vol. 36, No. 1: 67-81
CrossRef Randomization tests for small samples: an application for genetic expression data
Gary L. Gadbury, Grier P. Page, Moonseong Heo, John D. Mountz, David B. Allison
Journal of the Royal Statistical Society: Series C (Applied Statistics). Aug 2003, Vol. 52, No. 3: 365-376
CrossRef Temporal responses of Arabidopsis root architecture to phosphate starvation: evidence for the involvement of auxin signalling
Y. AL-GHAZI, B. MULLER, S. PINLOCHE, T. J. TRANBARGER, P. NACRY, M. ROSSIGNOL, F. TARDIEU, P. DOUMAS
Plant, Cell and Environment. Aug 2003, Vol. 26, No. 7: 1053-1066
CrossRef Resampling-based multiple testing for microarray data analysis
Youngchao Ge, Sandrine Dudoit, Terence P. Speed
Test. Jul 2003, Vol. 12, No. 1: 1-77
CrossRef Variances Are Not Always Nuisance Parameters
Raymond J. Carroll
Biometrics. Jul 2003, Vol. 59, No. 2: 211-220
CrossRef The Design and Analysis of Microarray Experiments: Applications in Parasitology
David A. Morrison, John T. Ellis
DNA and Cell Biology. Jun 2003, Vol. 22, No. 6: 357-394
Abstract |
Full Text PDF |
Reprints & PermissionsMicroarrays: How Many Do You Need?
Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
Journal of Computational Biology. Jun 2003, Vol. 10, No. 3-4: 653-667
Abstract |
Full Text PDF |
Reprints & PermissionsBayesian Estimation of Transcript Levels Using a General Model of Array Measurement Noise
Ron O. Dror, Jonathan G. Murnick, Nicola J. Rinaldi, Voichita D. Marinescu, Ryan M. Rifkin, Richard A. Young
Journal of Computational Biology. Jun 2003, Vol. 10, No. 3-4: 433-452
Abstract |
Full Text PDF |
Reprints & PermissionsGlobal analysis of cell type-specific gene expression
David W. Galbraith
Comparative and Functional Genomics. May 2003, Vol. 4, No. 2: 208-215
CrossRef Genes regulated by learning in the hippocampus
Tarek A. Leil, Alex Ossadtchi, Thomas E. Nichols, Richard M. Leahy, Desmond J. Smith
Journal of Neuroscience Research. Apr 2003, Vol. 71, No. 6: 763-768
CrossRef Statistical Methods for Analyzing Microarray Feature Data with Replications
Yaning Yang, Josephine Hoh, Clemens Broger, Martin Neeb, Joanne Edington, Klaus Lindpaintner, Jurg Ott
Journal of Computational Biology. Apr 2003, Vol. 10, No. 2: 157-169
Abstract |
Full Text PDF |
Reprints & PermissionsAPPLICATION OF MICROARRAY TECHNOLOGY IN ENVIRONMENTAL AND COMPARATIVE PHYSIOLOGY
Andrew Y. Gracey, Andrew R. Cossins
Annual Review of Physiology. Apr 2003, Vol. 65, No. 1: 231-259
CrossRef Arabidopsis
gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles
David P. Puthoff, Dan Nettleton, Steven R. Rodermel, Thomas J. Baum
The Plant Journal. Apr 2003, Vol. 33, No. 5: 911-921
CrossRef Gene expression profiling in islet biology and diabetes research
Ernesto Bernal-Mizrachi, Corentin Cras-M
neur, Mitsuru Ohsugi, M. Alan Permutt
Diabetes/Metabolism Research and Reviews. Feb 2003, Vol. 19, No. 1: 32-42
CrossRef Power and sample size for DNA microarray studies
Mei-Ling Ting Lee, G. A. Whitmore
Statistics in Medicine. Jan 2003, Vol. 21, No. 23: 3543-3570
CrossRef DNA array-based method for detection of large rearrangements in theBRCA1 gene
Andrey Frolov, Amanda H. Prowse, Lisa Vanderveer, Betsy Bove, Hong Wu, Andrew K. Godwin
Genes, Chromosomes and Cancer. Dec 2002, Vol. 35, No. 3: 232-241
CrossRef Of Meis and men: Lessons from a microarray study of teratogen action
Kimberly E. Docterman, Susan M. Smith
Teratology. Dec 2002, Vol. 66, No. 5: 217-223
CrossRef IMPACT OF GENOMIC TECHNOLOGIES ON STUDIES OF BACTERIAL GENE EXPRESSION
Virgil Rhodius, Tina K. Van Dyk, Carol Gross, Robert A. LaRossa
Annual Review of Microbiology. Nov 2002, Vol. 56, No. 1: 599-624
CrossRef The curse of normalization
Olaf Wolkenhauer, Carla M
ller-Levet, Fatima Sanchez-Cabo
Comparative and Functional Genomics. Sep 2002, Vol. 3, No. 4: 375-379
CrossRef DNA MICROARRAY TECHNOLOGY: Devices, Systems, and Applications
Michael J. Heller
Annual Review of Biomedical Engineering. Sep 2002, Vol. 4, No. 1: 129-153
CrossRef Heterologous array analysis in Pinaceae: hybridization ofPinus taeda cDNA arrays with cDNA from needles and embryogenic cultures ofP. taeda,P. sylvestris orPicea abies
Leonel van Zyl, Sara von Arnold, Peter Bozhkov, Yongzhong Chen, Ulrika Egertsdotter, John MacKay, Ronald R. Sederoff, Jing Shen, Lyubov Zelena, David H. Clapham
Comparative and Functional Genomics. Sep 2002, Vol. 3, No. 4: 306-318
CrossRef Identifying and Quantifying Sources of Variation in Microarray Data Using High-Density cDNA Membrane Arrays
Kevin R. Coombes, W. Edward Highsmith, Tammy A. Krogmann, Keith A. Baggerly, David N. Stivers, Lynne V. Abruzzo
Journal of Computational Biology. Aug 2002, Vol. 9, No. 4: 655-669
Abstract |
Full Text PDF |
Reprints & PermissionsBayesian Hierarchical Model for Identifying Changes in Gene Expression from Microarray Experiments
Philippe Broët, Sylvia Richardson, François Radvanyi
Journal of Computational Biology. Aug 2002, Vol. 9, No. 4: 671-683
Abstract |
Full Text PDF |
Reprints & PermissionsRole of gene expression microarray analysis in finding complex disease genes
Chi C. Gu, D.C. Rao, Gary Stormo, Chindo Hicks, Michael A. Province
Genetic Epidemiology. Jul 2002, Vol. 23, No. 1: 37-56
CrossRef A novel mechanism for the regulation of osteoblast differentiation: Transcription of periostin, a member of the fasciclin I family, is regulated by the bHLH transcription factor, twist
Akira Oshima, Hideyuki Tanabe, Tao Yan, Gina N. Lowe, Carlotta A. Glackin, Akira Kudo
Journal of Cellular Biochemistry. Feb 2002, Vol. 86, No. 4: 792-804
CrossRef Microarrays in ecology and evolution: a preview
Greg Gibson
Molecular Ecology. Feb 2002, Vol. 11, No. 1: 17-24
CrossRef Current Awareness
Comparative and Functional Genomics. Jan 2002, Vol. 2, No. 6: 401-412
CrossRef Identifying Differentially Expressed Genes in cDNA Microarray Experiments
Keith A. Baggerly, Kevin R. Coombes, Kenneth R. Hess, David N. Stivers, Lynne V. Abruzzo, Wei Zhang
Journal of Computational Biology. Nov 2001, Vol. 8, No. 6: 639-659
Abstract |
Full Text PDF |
Reprints & Permissions
TOC Alert
CiteULike
Delicious
Digg This
Facebook
Newsvine