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OMICS: A Journal of Integrative Biology
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Volume 10, Number 2
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In Memoriam—Guy Richard della Cioppa, 1949–2006
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 83-83.
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Foreword


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A Special Issue on Data Standards
Dawn Field, Susanna-Assunta Sansone
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 84-93.
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Original Papers


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Data Standards: A Call to Action
Cath Brooksbank, John Quackenbush
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 94-99.
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Meeting Report:eGenomics: Cataloguing Our Complete Genome Collection II
Dawn Field, Norman Morrison, Jeremy Selengut, Peter Sterk
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 100-104.
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Evidence Standards in Experimental and Inferential INSDC Third Party Annotation Data
Guy Cochrane, Kirsty Bates, Rolf Apweiler, Yoshio Tateno, Jun Mashima, Takehide Kosuge, Ilene Karsch Mizrachi, Susan Schafer, Michael Fetchko
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 105-113.
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Genome Reviews: Standardizing Content and Representation of Information about Complete Genomes
Peter Sterk, Paul J. Kersey, Rolf Apweiler
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 114-118.
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Requirements and Standards for Organelle Genome Databases
Jeffrey L. Boore
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 119-126.
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Concept of Sample in OMICS Technology
Norman Morrison, Guy Cochrane, Nadeem Faruque, Tatiana Tatusova, Yoshio Tateno, David Hancock, Dawn Field
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 127-137.
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MGED Standards: Work in Progress
Catherine A. Ball, Alvis Brazma
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 138-144.
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The Work of the Human Proteome Organisation's Proteomics Standards Initiative (HUPO PSI)
Chris F. Taylor, Henning Hermjakob, Randall K. Julian Jr., John S. Garavelli, Ruedi Aebersold, Rolf Apweiler
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 145-151.
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Experimental Standards for High-Throughput Proteomics
Jason M. Hogan, Roger Higdon, Eugene Kolker
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 152-157.
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Establishing Reporting Standards for Metabolomic and Metabonomic Studies: A Call for Participation
Oliver Fiehn, Bruce Kristal, Ben Van Ommen, Lloyd W. Sumner, Susanna-Assunta Sansone, Chris Taylor, Nigel Hardy, Rima Kaddurah-Daouk
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 158-163.
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A Strategy Capitalizing on Synergies: The Reporting Structure for Biological Investigation (RSBI) Working Group
Susanna-Assunta Sansone, Philippe Rocca-Serra, Weida Tong, Jennifer Fostel, Norman Morrison, Andrew R. Jones, RSBI Members
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 164-171.
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Original Papers


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Standard Annotation of Environmental OMICS Data: Application to the Transcriptomics Domain
Norman Morrison, A. Joseph Wood, David Hancock, Sonia Shah, Luke Hakes, Tanya Gray, Bela Tiwari, Peter Kille, Andrew Cossins, Matthew Hegarty, Michael J. Allen, William H. Wilson, Peter Olive, Kim Last, Cas Kramer, Thierry Bailhache, Jonathan Reeves, Denise Pallett, Justin Warne, Karim Nashar, Helen Parkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, Robert Stevens, Jason Snape, Andy Brass, Dawn Field
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 172-178.
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FuGE: Functional Genomics Experiment Object Model
Andrew R. Jones, Angel Pizarro, Paul Spellman, Michael Miller, Fuge Working Group
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 179-184.
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National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge
Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Sima Misra, Monte Westerfield, Michael Ashburner, Ida Sim, Christopher G. Chute, Harold Solbrig , Margaret-Anne Storey, Barry Smith, John Day-Richter, Natalya F. Noy, Mark A. Musen
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 185-198.
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Development of FuGO: An Ontology for Functional Genomics Investigations
Patricia L. Whetzel, Ryan R. Brinkman, Helen C. Causton, Liju Fan, Dawn Field, Jennifer Fostel, Gilberto Fragoso, Tanya Gray, Mervi Heiskanen, Tina Hernandez-Boussard, Norman Morrison, Helen Parkinson, Philippe Rocca-Serra, Susanna-Assunta Sansone, Daniel Schober, Barry Smith, Robert Stevens, Christian J. Stoeckert Jr., Chris Taylor, Joe White, Andrew Wood, Fugo Working Group
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 199-204.
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Development of the Minimum Information Specification forIn SituHybridization and Immunohistochemistry Experiments (MISFISHIE)
Eric W. Deutsch, Catherine A. Ball, G. Steven Bova, Alvis Brazma, Roger E. Bumgarner, David Campbell, Helen C. Causton, Jeff Christiansen, Duncan Davidson, Lillian J. Eichner, Young Ah Goo, Sean Grimmond, Thorsten Henrich, Michael H. Johnson, Martin Korb, Jason C. Mills, Asa Oudes, Helen E. Parkinson, Laura E. Pascal, John Quackenbush, Mirana Ramialison, Martin Ringwald, Susanna-A. Sansone, Gavin Sherlock, Christian J. Stoeckert Jr., Jason Swedlow, Ronald C. Taylor, Laura Walashek, Yi Zhou, Alvin Y. Liu, Lawrence D. True
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 205-208.
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Data Standards for Flow Cytometry
Josef Spidlen, Robert C. Gentleman, Perry D. Haaland, Morgan Langille, Nolwenn Le Meur, Michael F. Ochs, Charles Schmitt, Clayton A. Smith, Adam S. Treister, Ryan R. Brinkman
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 209-214.
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Generation Challenge Programme (GCP): Standards for Crop Data
Richard Bruskiewich, Guy Davenport, Tom Hazekamp, Thomas Metz, Manuel Ruiz, Reinhard Simon, Masaru Takeya , Jennifer Lee, Martin Senger, Graham Mclaren, Theo Van Hintum
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 215-219.
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Standard Data Model Representation for Taxonomic Information
J. Kennedy, R. Hyam, R. Kukla, T. Paterson
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 220-230.
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Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Information about a Phylogenetic Analysis (MIAPA)
Jim Leebens-Mack, Todd Vision, Eric Brenner, John E. Bowers, Steven Cannon, Mark J. Clement, Clifford W. Cunningham, Claude DePamphilis, Rob DeSalle, Jeff J. Doyle, Jonathan A. Eisen, Xun Gu, John Harshman, Robert K. Jansen, Elizabeth A. Kellogg, Eugene V. Koonin, Brent D. Mishler, Hervé Philippe, J. Chris Pires, Yin-Long Qiu, Seung Y. Rhee, Kimmen Sjölander, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kerr Wall, Tandy Warnow, Christian Zmasek
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 231-237.
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Consideration of Future Requirements for Raman Microbiology as an Examplar for the Ab Initio Development of Informatics Frameworks for Emergent OMICS Technologies
Wei E. Huang, Andrew J. Spiers
OMICS: A Journal of Integrative Biology. June 2006, 10(2): 238-241.
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